Package: mrbin 1.9.0
mrbin: Metabolomics Data Analysis Functions
A collection of functions for processing and analyzing metabolite data. The namesake function mrbin() converts 1D or 2D Nuclear Magnetic Resonance data into a matrix of values suitable for further data analysis and performs basic processing steps in a reproducible way. Negative values, a common issue in such data, can be replaced by positive values (<doi:10.1021/acs.jproteome.0c00684>). All used parameters are stored in a readable text file and can be restored from that file to enable exact reproduction of the data at a later time. The function fia() ranks features according to their impact on classifier models, especially artificial neural network models.
Authors:
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mrbin.pdf |mrbin.html✨
mrbin/json (API)
NEWS
# Install 'mrbin' in R: |
install.packages('mrbin', repos = c('https://kleinomicslab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kleinomicslab/mrbin/issues
artificial-neural-networksfeature-extractionmetabolomicsnmr
Last updated 9 days agofrom:62f78af2cf. Checks:1 OK, 8 NOTE. Indexed: yes.
Target | Result | Latest binary |
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Doc / Vignettes | OK | Mar 12 2025 |
R-4.5-win | NOTE | Mar 12 2025 |
R-4.5-mac | NOTE | Mar 12 2025 |
R-4.5-linux | NOTE | Mar 12 2025 |
R-4.4-win | NOTE | Mar 12 2025 |
R-4.4-mac | NOTE | Mar 12 2025 |
R-4.4-linux | NOTE | Mar 12 2025 |
R-4.3-win | NOTE | Mar 12 2025 |
R-4.3-mac | NOTE | Mar 12 2025 |
Exports:addToPlotannotatemrbinatnvcheckmrbincontMincontPluscreatemrbincropNMRdilutionCorrectiondowneditmetabolitesmrbineditmrbinfiagetEnvintMinintPlusleftlogTrafometadatamrbinmrbinmrbinrunmrheatmapmrplotplotMultiNMRplotNMRplotPCAplotResultsPQNScalingpredictWrapperprintParametersputToEnvreadBrukerrecreatemrbinremoveFromPlotremoveNoiseremoveSpectrumresetEnvrightsetCurrentSpectrumsetDilutionFactorssetNoiseLevelssetOffsetsetParamtimeStampMrbintrimZerosunitVarianceScalingupzoomzoomInzoomOut
Dependencies: