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mrbin.Rnwusingutils::SweaveA collection of functions for processing and analyzing metabolite data. The namesake function mrbin() converts 1D or 2D Nuclear Magnetic Resonance data into a matrix of values suitable for further data analysis and performs basic processing steps in a reproducible way. Negative values, a common issue in such data, can be replaced by positive values (<doi:10.1021/acs.jproteome.0c00684>). All used parameters are stored in a readable text file and can be restored from that file to enable exact reproduction of the data at a later time. The function fia() ranks features according to their impact on classifier models, especially artificial neural network models.
Authors:Matthias Klein [aut, cre]
mrbin_1.9.5.tar.gz
mrbin_1.9.5.zip(r-4.7-any)mrbin_1.9.5.zip(r-4.6-any)mrbin_1.9.5.zip(r-4.5-any)
mrbin_1.9.5.tgz(r-4.6-any)mrbin_1.9.5.tgz(r-4.5-any)
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mrbin_1.9.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
mrbin/json (API)
| # Install 'mrbin' in R: |
| install.packages('mrbin', repos = c('https://kleinomicslab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kleinomicslab/mrbin/issues
artificial-neural-networksfeature-extractionmetabolomicsnmr
4.04 score 2 stars 11 scripts 343 downloads 51 exports 2 dependencies
Last updated from:8ba83edef3. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 247 | ||
| source / vignettes | OK | 217 | ||
| linux-release | NOTE | 211 | ||
| macos-release | NOTE | 203 | ||
| macos-oldrel | NOTE | 205 | ||
| windows-devel | NOTE | 196 | ||
| windows-release | NOTE | 199 | ||
| windows-oldrel | NOTE | 191 | ||
| wasm-release | OK | 108 |
Exports:addToPlotannotatemrbinatnvcheckmrbincontMincontPluscreateAnnotationListcreatemrbincropNMRdilutionCorrectiondowneditmetabolitesmrbineditmrbinfiagetEnvintMinintPlusleftlogTrafometadatamrbinmrbinmrbinrunmrheatmapmrplotplotMultiNMRplotNMRplotPCAplotResultsPQNScalingpredictWrapperprintParametersputToEnvreadBrukerrecreatemrbinremoveFromPlotremoveNoiseremoveSpectrumresetEnvrightsetCurrentSpectrumsetDilutionFactorssetNoiseLevelssetOffsetsetParamtimeStampMrbintrimZerosunitVarianceScalingupzoomzoomInzoomOut